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Publications
2009
Thiriet C, Hayes JJ (2009). Linker histone phosphorylation regulates global timing of replication origin firing. J Biol Chem, 284:2823-9.
Kan PY, Caterino TL, Hayes JJ (2009). The H4 tail domain participates in intra- and internucleosome interactions with protein and DNA during folding and oligomerization of nucleosome arrays. Mol Cell Biol, 29:538-46.
2008
Wang X, Hayes JJ (2008). Acetylation mimics within individual core histone tail domains indicate distinct roles in regulating the stability of higher-order chromatin structure. Mol Cell Biol, 28:227-36.
2007
Yang Z, Zheng C, Hayes JJ (2007). The core histone tail domains contribute to sequence-dependent nucleosome positioning. J Biol Chem, 282:7930-8.
Kan PY, Hayes JJ (2007). Detection of interactions between nucleosome arrays mediated by specific core histone tail domains. Methods, 41:278-85.
Kan PY, Lu X, Hansen JC, Hayes JJ (2007). The H3 tail domain participates in multiple interactions during folding and self-association of nucleosome arrays. Mol Cell Biol, 27:2084-91.
Wang X, Hayes JJ (2007). Site-specific binding affinities within the H2B tail domain indicate specific effects of lysine acetylation. J Biol Chem.
2006
Wang X, Hayes JJ (2006). Physical methods used to study core histone tail structures and interactions in solution. Biochem Cell Biol, 84:578-88.
Jagannathan I, Cole HA, Hayes JJ (2006). Base excision repair in nucleosome substrates. Chromosome Res, 14:27-37.
Thiriet C, Hayes JJ (2006). Histone dynamics during transcription: exchange of H2A/H2B dimers and H3/H4 tetramers during pol II elongation. Results Probl Cell Differ, 41:77-90.
2005
Zheng C, Lu X, Hansen JC, Hayes JJ (2005). Salt-dependent intra- and internucleosomal interactions of the H3 tail domain in a model oligonucleosomal array. J Biol Chem, 280:33552-7.
Thiriet C, Hayes JJ (2005). Replication-independent core histone dynamics at transcriptionally active loci in vivo. Genes Dev, 19:677-82.
Thiriet C, Hayes JJ (2005). Chromatin in need of a fix: phosphorylation of H2AX connects chromatin to DNA repair. Mol Cell, 18:617-22.
Yang Z, Zheng C, Thiriet C, Hayes JJ (2005). The core histone N-terminal tail domains negatively regulate binding of transcription factor IIIA to a nucleosome containing a 5S RNA gene via a novel mechanism. Mol Cell Biol, 25:241-9.
Owen BA, Yang Z, Lai M, Gajek M, Badger JD2nd, Hayes JJ, Edelmann W, Kucherlapati R, Wilson TM, McMurray CT (2005). (CAG)(n)-hairpin DNA binds to Msh2-Msh3 and changes properties of mismatch recognition. Nat Struct Mol Biol, 12:663-70.
2004
Hayes JJ (2004). In vitro analysis of chromatin structure in model systems. Methods, 33:1-2.
Yang Z, Hayes JJ (2004). Large scale preparation of nucleosomes containing site-specifically chemically modified histones lacking the core histone tail domains. Methods, 33:25-32.
Vitolo JM, Yang Z, Basavappa R, Hayes JJ (2004). Structural Features of Transcription Factor IIIA Bound to a Nucleosome in Solution. Mol Cell Biol, 24:697-707.
Zheng C, Hayes JJ (2004). Probing core histone tail-DNA interactions in a model dinucleosome system. Methods Enzymol, 375:179-93.
2003
Zheng C, Hayes JJ (2003). Intra- and inter-nucleosomal protein-DNA interactions of the core histone tail domains in a model system. J Biol Chem, 278:24217-24.
Yang Z, Hayes JJ (2003). Xenopus transcription factor IIIA and the 5S nucleosome: development of a useful in vitro system. Biochem Cell Biol, 81:177-84.
Aoyagi S, Wade PA, Hayes JJ (2003). Nucleosome sliding induced by the xMi-2 complex does not occur exclusively via a simple twist-diffusion mechanism. J Biol Chem, 278:30562-8.
Zheng C, Hayes JJ (2003). Structures and interactions of the core histone tail domains. Biopolymers, 68:539-46.
2002
Ye, J., Yang, Z. Y., Hayes, J. J., Eickbush, T. H. (2002) R2 retrotransposition on assembled nucleosomes depends on the translational position of the target site. EMBO J. 21:6853-6864.
Huggins, C.F., Chafin, D. R., Aoyagi, R., Henricksen, L. A., Bambara, R. A. and Hayes,. J. J. (2002). Flap endonuclease 1 efficiently cleaves base excision repair and DNA replication intermediates assembled into nucleosomes. Molecular Cell 10:1201-1211.
S Aoyagi and J. J. Hayes (2002). hSWI/SNF-catalyzed nucleosome sliding does not occur solely via a twist diffusion mechanism. Mol. Cell. Biol. 22:7484-7490.
S. Aoyagi, G. Narlikar, C. Zheng, S. Sif, R.E. Kingston, and J.J. Hayes (2002). Nucleosome Remodeling by the Human SWI/SNF Complex Requires Transient Global Disruption Of Histone-DNA Interactions. Mol. Cell. Biol. 22:3653-3662.
J. J. Hayes. (2002). Changing Chromatin from the Inside. Nature Struct. Biol. 9:161-163.
J. J. Hayes and J. C. Hansen. (2002). New insights into unwrapping DNA from the nucleosome from a single-molecule optical tweezers method. Proc. Natl. Acad. Sci. USA 99:172-1754.
Ura K, Hayes JJ (2002) Nucleotide Excision Repair and Chromatin Remodeling. Eur. J. Biochem. 269:2288-2293.
2001
Thiriet C, Hayes JJ (2001) A novel labeling technique reveals a function for histone H2A/H2B dimer tail domains in chromatin assembly in vivo. Genes Devel. 15:2048-2053.
Angelov D, Vitolo JM, Mutskov V, Dimitrov S, Hayes JJ (2001) Preferential Interaction of the Core Histone Tail Domains with Linker DNA. Proc. Nat'l Acad. Sci. USA 98:6599-604
Chafin DR, Hayes JJ (2001) Site-Directed Cleavage of DNA by Linker Histone-Fe(II) EDTA Conjugates Meth. Mol. Biol. 148:275-290
Hayes JJ, Hansen JC (2001) Nucleosomes and the Chromatin Fiber. Curr. Opin. Genet. Devel. 11:124-129
Thiriet C, Hayes JJ (2001) Assembly into chromatin and subtype-specific transcriptional effects of exogenous linker histones directly incorporated into a living Physarum cell. J. Cell Science 114:965-973
2000
Chafin DR, Vitolo JM, Henricksen LA, Bambara RA, Hayes JJ (2000) Human DNA Ligase Efficiently Seals Nicks in Nucleosomes. EMBO J. 19:5492-5501
Fernandez De Henestrosa AR, Ogi T, Aoyagi S, Chafin D, Hayes JJ, Ohmori H, Woodgate R (2000) Identification of additional genes belonging to the LexA regulon in Escherichia coli. Mol Microbiol 35:1560-72
Vitolo JM, Thiriet C, Hayes JJ (2000) DNase I and Hydroxyl Radical Characterization of Chromatin Complexes. Curr. Prot. Mol. Biol 3
Vitolo JM, Thiriet C, Hayes JJ (2000) The H3-H4 N-terminal tail domains are the primary mediators of transcription factor IIIA access to 5S DNA within a nucleosome. Mol. Cell Biol. 20:2167-75
Widlund HR, Vitolo JM, Thiriet C, Hayes JJ (2000) DNA sequence-dependent contributions of core histone tails to nucleosome stability: differential effects of acetylation and proteolytic tail removal. Biochemistry 39:3835-41
1999
Chafin DR, Lee KM, Hayes JJ (1999) Site-directed chemical probing of histone-DNA interactions. Methods Mol. Biol. 119:27-43
Lee KM, Chafin DR, Hayes JJ (1999) Targeted cross-linking and DNA cleavage within model chromatin complexes. Methods Enzymol. 304:231-51
Lee KM, Sif S, Kingston RE, Hayes JJ (1999) hSWI/SNF disrupts interactions between the H2A N-terminal tail and nucleosomal DNA. Biochemistry 38:8423-9
Thiriet C, Hayes JJ (1999) Chromatin remodeling by cell cycle stage-specific extracts from Physarum polycephalum. Eur J Cell Biol 78:214-20
Thiriet C, Hayes JJ (1999) Histone proteins in vivo: cell-cycle-dependent physiological effects of exogenous linker histones incorporated into Physarum polycephalum. Methods 17:140-50
Wolffe AP, Hayes JJ (1999) Chromatin disruption and modification. Nucleic Acids Res. 27:711-20