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Publications
2003
Zheng, C., and Hayes, J. J. (2003) Structures and interactions of the core histone tail domains. Biopolymers: Nucleic Acids Sciences (in press).
2002
Ye, J., Yang, Z. Y., Hayes, J. J., Eickbush, T. H. (2002) R2 retrotransposition on assembled nucleosomes depends on the translational position of the target site. EMBO J. 21:6853-6864.
Huggins, C.F., Chafin, D. R., Aoyagi, R., Henricksen, L. A., Bambara, R. A. and Hayes,. J. J. (2002). Flap endonuclease 1 efficiently cleaves base excision repair and DNA replication intermediates assembled into nucleosomes. Molecular Cell 10:1201-1211.
S Aoyagi and J. J. Hayes (2002). hSWI/SNF-catalyzed nucleosome sliding does not occur solely via a twist diffusion mechanism. Mol. Cell. Biol. 22:7484-7490.
S. Aoyagi, G. Narlikar, C. Zheng, S. Sif, R.E. Kingston, and J.J. Hayes (2002). Nucleosome Remodeling by the Human SWI/SNF Complex Requires Transient Global Disruption Of Histone-DNA Interactions. Mol. Cell. Biol. 22:3653-3662.
J. J. Hayes. (2002). Changing Chromatin from the Inside. Nature Struct. Biol. 9:161-163.
J. J. Hayes and J. C. Hansen. (2002). New insights into unwrapping DNA from the nucleosome from a single-molecule optical tweezers method. Proc. Natl. Acad. Sci. USA 99:172-1754.
Ura K, Hayes JJ (2002) Nucleotide Excision Repair and Chromatin Remodeling. Eur. J. Biochem. 269:2288-2293.
2001
Thiriet C, Hayes JJ (2001) A novel labeling technique reveals a function for histone H2A/H2B dimer tail domains in chromatin assembly in vivo. Genes Devel. 15:2048-2053.
Angelov D, Vitolo JM, Mutskov V, Dimitrov S, Hayes JJ (2001) Preferential Interaction of the Core Histone Tail Domains with Linker DNA. Proc. Nat'l Acad. Sci. USA 98:6599-604
Chafin DR, Hayes JJ (2001) Site-Directed Cleavage of DNA by Linker Histone-Fe(II) EDTA Conjugates Meth. Mol. Biol. 148:275-290
Hayes JJ, Hansen JC (2001) Nucleosomes and the Chromatin Fiber. Curr. Opin. Genet. Devel. 11:124-129
Thiriet C, Hayes JJ (2001) Assembly into chromatin and subtype-specific transcriptional effects of exogenous linker histones directly incorporated into a living Physarum cell. J. Cell Science 114:965-973
2000
Chafin DR, Vitolo JM, Henricksen LA, Bambara RA, Hayes JJ (2000) Human DNA Ligase Efficiently Seals Nicks in Nucleosomes. EMBO J. 19:5492-5501
Fernandez De Henestrosa AR, Ogi T, Aoyagi S, Chafin D, Hayes JJ, Ohmori H, Woodgate R (2000) Identification of additional genes belonging to the LexA regulon in Escherichia coli. Mol Microbiol 35:1560-72
Vitolo JM, Thiriet C, Hayes JJ (2000) DNase I and Hydroxyl Radical Characterization of Chromatin Complexes. Curr. Prot. Mol. Biol 3
Vitolo JM, Thiriet C, Hayes JJ (2000) The H3-H4 N-terminal tail domains are the primary mediators of transcription factor IIIA access to 5S DNA within a nucleosome. Mol. Cell Biol. 20:2167-75
Widlund HR, Vitolo JM, Thiriet C, Hayes JJ (2000) DNA sequence-dependent contributions of core histone tails to nucleosome stability: differential effects of acetylation and proteolytic tail removal. Biochemistry 39:3835-41
1999
Chafin DR, Lee KM, Hayes JJ (1999) Site-directed chemical probing of histone-DNA interactions. Methods Mol. Biol. 119:27-43
Lee KM, Chafin DR, Hayes JJ (1999) Targeted cross-linking and DNA cleavage within model chromatin complexes. Methods Enzymol. 304:231-51
Lee KM, Sif S, Kingston RE, Hayes JJ (1999) hSWI/SNF disrupts interactions between the H2A N-terminal tail and nucleosomal DNA. Biochemistry 38:8423-9
Thiriet C, Hayes JJ (1999) Chromatin remodeling by cell cycle stage-specific extracts from Physarum polycephalum. Eur J Cell Biol 78:214-20
Thiriet C, Hayes JJ (1999) Histone proteins in vivo: cell-cycle-dependent physiological effects of exogenous linker histones incorporated into Physarum polycephalum. Methods 17:140-50
Wolffe AP, Hayes JJ (1999) Chromatin disruption and modification. Nucleic Acids Res. 27:711-20